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+ | ====== CEST sources ====== | ||
+ | Welcome to //CEST sources//! CEST stands for Chemical Exchange Saturation Transfer, a Magnetic Resonance Imaging ([[http:// | ||
+ | ==== Overview==== | ||
+ | Find below the different sections of CEST sources. For now the focus is on Z-spectra evaluation methods, and Z-spectra simulation and fitting. Each subsection contains links to code and video tutorials. All code is kept simple to be easily adjustable for your scientific question. If you have a suggestion for a video tutorial feel free to [[http:// | ||
+ | |||
+ | Download links to all packages can be found on the github page [[https:// | ||
+ | |||
+ | ===== - Data evaluation tools ===== | ||
+ | |||
+ | ==== - Image data preprocessing - Normalization, | ||
+ | |||
+ | {{:: | ||
+ | |||
+ | |||
+ | |||
+ | ==== - Z-spectra B1-correction ==== | ||
+ | |||
+ | {{:: | ||
+ | |||
+ | |||
+ | ===== - Analytical solutions of the Bloch-McConnell equations ===== | ||
+ | Here you find Z-spectrum simulations in the case of a two and three pool systems under continous wave (cw) irradiation. For a two pool system also the solution for pulsed spinlock irradiation is given. | ||
+ | |||
+ | {{:: | ||
+ | |||
+ | {{:: | ||
+ | [[Analytic Z-spectra-cw-3pool|Analytical solution for 3-pools under cw irradiation: | ||
+ | |||
+ | {{:: | ||
+ | [[Analytic Z-spectra - pulsed SL|Analytical solution for 2-pools under pulsed spin-lock irradiation (ISAR2)]] | ||
+ | |||
+ | ===== - Full numerical solutions of the Bloch-McConnell equations ===== | ||
+ | |||
+ | {{:: | ||
+ | |||
+ | ===== - Quantitative CEST ===== | ||
+ | Here you find methods for CEST quantification. This means to achieve access to the CEST pool parameters as defined in the Bloch-McConnell equations such as exchange rate, concentration and transverse relaxation of the CEST site. | ||
+ | |||
+ | {{:: | ||
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+ | ===== - CEST Theory ===== | ||
+ | Here you find some Mupad codes for getting more theoretical insight into the eigenspace solution that forms the analytical CEST solution. | ||
+ | |||
+ | {{:: | ||
+ | |||
+ | |||
+ | ===== - standard CEST protocols | ||
+ | For reproducible CEST we need to agree on some standard protocols. | ||
+ | Find a collection of used sequences here. | ||
+ | [[standard CEST protocols]] | ||
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+ | |||
+ | |||
+ | ===== - Literature ===== | ||
+ | |||
+ | [[CEST intro]] | ||
+ | |||
+ | [[the reviews]] | ||
+ | |||
+ | [[glucoCEST]] | ||
+ | |||
+ | ---- | ||
+ | ---- | ||
+ | {{ :: | ||
+ | //CEST sources// was initiated 2014 at the [[http:// | ||
+ | |||
+ | {{ :: | ||
+ | |||
+ | It is now hosted at [[http:// | ||
+ | If you want to publish or link to code here, too, feel free to [[http:// | ||
+ | |||
+ | [[Impressum]] | ||
+ | |||
+ | ---- |