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-====== CEST sources ======
-Welcome to //CEST sources//! CEST stands for Chemical Exchange Saturation Transfer, a Magnetic Resonance Imaging ([[http://en.wikipedia.org/wiki/MRI|MRI]]) technique which promises insight into pathologies on a molecular level. If you want to know more about CEST, find details in the [[CEST intro]] or [[the reviews]]. //CEST sources// is a project to share code, link resources, and bundle knowledge about CEST. //CEST sources// is intended for helping researchers and students in the field of CEST and magnetization transfer. Most code is in Matlab but we try to upload other implementations, too.
-==== Overview====
-Find below the different sections of CEST sources. For now the focus is on Z-spectra evaluation methods, and Z-spectra simulation and fitting. Each subsection contains links to code and video tutorials. All code is kept simple to be easily adjustable for your scientific question. If you have a suggestion for a video tutorial feel free to [[http://www.kyb.tuebingen.mpg.de/nc/de/employee/details/mzaiss.html|contact us]].
-Download links to all packages can be found on the github page [[https://github.com/cest-sources|github.com/cest-sources]]. ([[About github]])
-===== - Data evaluation tools =====
-==== - Image data preprocessing - Normalization, B0 correction, Lorentzian fitting, and contrast computation====
-{{::cest_eval.png?direct&amp;200|}} [[CEST_eval|CEST data evaluation tool]]
-==== - Z-spectra B1-correction ====
-{{::b1_corr.png?direct&amp;200|}}[[B1-correction|Correction for B1 inhomogeneity artifacts in CEST images]]
-===== - Analytical solutions of the Bloch-McConnell equations =====
-Here you find Z-spectrum simulations in the case of a two and three pool systems under continous wave (cw) irradiation. For a two pool system also the solution for pulsed spinlock irradiation is given.
-{{::z_cw_b1.png?160|}}[[Analytic Z-spectra-cw-2pool|Analytical solution for 2-pools under cw irradiation]]
-{{::z_cw_b1_mt.png?160|}}
-[[Analytic Z-spectra-cw-3pool|Analytical solution for 3-pools under cw irradiation: water, CEST and semi-soild MT]]
-{{::z_plsd_b1.png?160|}}
-[[Analytic Z-spectra - pulsed SL|Analytical solution for 2-pools under pulsed spin-lock irradiation (ISAR2)]]
-===== - Full numerical solutions of the Bloch-McConnell equations =====
-{{::bm.png?direct&amp;250|}}[[BM_sim_fit|Full numerical Bloch-McConnell solution]]
-===== - Quantitative CEST =====
-Here you find methods for CEST quantification. This means to achieve access to the CEST pool parameters as defined in the Bloch-McConnell equations such as exchange rate, concentration and transverse relaxation of the CEST site.
-{{::b1fit.png?direct&amp;160|}}[[Multi-B1-fit-cw|CEST quantification by a Multi-B1-fit under cw irradiation - 2 pools]]
-===== - CEST Theory =====
-Here you find some Mupad codes for getting more theoretical insight into the eigenspace solution that forms the analytical CEST solution.
-{{::bm.png?direct&amp;250|}}[[Bloch-McConnell-Theory|Bloch, Bloch-McConnell, and CEST-Theory]]
-===== - standard CEST protocols  =====
-[[standard CEST protocols]]
-===== - Literature =====
-[[CEST intro]]
-[[the reviews]]
-[[glucoCEST]]
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-{{ ::logo_dkfz.png?direct&amp;250|}}
-//CEST sources// was initiated 2014 at the [[http://www.dkfz.de/en/index.html|German Cancer Research Center (DKFZ)]], Heidelberg Germany  by the project group CEST imaging.
-{{ ::kyblogo.jpg?100|}} {{ ::wordmark-full.png?150|}}
-It is now hosted at [[http://www.kyb.tuebingen.mpg.de/nc/employee/details/mzaiss.html|Max Planck Institute for Biological Cybernetics]], Tübingen and part of the european [[http://www.eibir.org/projects/h2020-projects/glint/|GLINT project]].
-If you want to publish or link to code here, too, feel free to [[http://www.kyb.tuebingen.mpg.de/nc/employee/details/mzaiss.html|contact us]].
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